3ED5
The crystal structure of YfnB from Bacillus subtilis subsp. subtilis str. 168
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | APS BEAMLINE 19-BM |
Synchrotron site | APS |
Beamline | 19-BM |
Temperature [K] | 100 |
Detector technology | CCD |
Collection date | 2008-04-08 |
Detector | SBC-3 |
Wavelength(s) | 0.97948 |
Spacegroup name | P 65 |
Unit cell lengths | 91.186, 91.186, 68.253 |
Unit cell angles | 90.00, 90.00, 120.00 |
Refinement procedure
Resolution | 25.820 - 1.720 |
R-factor | 0.17245 |
Rwork | 0.171 |
R-free | 0.19725 |
Structure solution method | SAD |
RMSD bond length | 0.016 |
RMSD bond angle | 1.394 |
Data reduction software | HKL-3000 |
Data scaling software | HKL-3000 |
Phasing software | SHELXD |
Refinement software | REFMAC (5.5.0054) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 26.000 | 1.740 |
High resolution limit [Å] | 1.720 | 1.720 |
Rmerge | 0.089 | 0.740 |
Number of reflections | 34185 | |
<I/σ(I)> | 32.2 | 1.82 |
Completeness [%] | 99.6 | 99.9 |
Redundancy | 7.1 | 6.9 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 4.6 | 289 | 3.5M Sodium Format 0.1M Sodium Acetate Trihydrate, pH 4.6, VAPOR DIFFUSION, SITTING DROP, temperature 289K |