Loading
PDBj
MenuPDBj@FacebookPDBj@X(formerly Twitter)PDBj@BlueSkyPDBj@YouTubewwPDB FoundationwwPDBDonate
RCSB PDBPDBeBMRBAdv. SearchSearch help

3E8M

Structure-function Analysis of 2-Keto-3-deoxy-D-glycero-D-galacto-nononate-9-phosphate (KDN) Phosphatase Defines a New Clad Within the Type C0 HAD Subfamily

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsNSLS BEAMLINE X12C
Synchrotron siteNSLS
BeamlineX12C
Temperature [K]100
Detector technologyCCD
Collection date2006-06-02
DetectorADSC QUANTUM 210
Wavelength(s)0.9000
Spacegroup nameP 21 21 2
Unit cell lengths81.243, 107.482, 75.093
Unit cell angles90.00, 90.00, 90.00
Refinement procedure
Resolution28.782 - 1.100
R-factor0.128
Rwork0.127
R-free0.14100
Starting model (for MR)1k1e
RMSD bond length0.015
RMSD bond angle0.031
Data reduction softwareDENZO
Data scaling softwareSCALEPACK
Phasing softwareMOLREP
Refinement softwarePHENIX
Data quality characteristics
 OverallOuter shell
Low resolution limit [Å]50.0001.140
High resolution limit [Å]1.1001.100
Rmerge0.0470.290
Number of reflections258326
<I/σ(I)>43.53.8
Completeness [%]97.484.8
Redundancy11.24.2
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, HANGING DROP8.529830% w/v polyethelene glycol (PEG) 4,000, 0.1 M Tris HCl pH 8.5, 0.2 M sodium acetate and 10 mM magnesium chloride, VAPOR DIFFUSION, HANGING DROP, temperature 298.0K

237735

PDB entries from 2025-06-18

PDB statisticsPDBj update infoContact PDBjnumon