3DW5
Crystal Structure of the Sarcin/Ricin Domain from E. COLI 23S rRNA, U2656-OCH3 modified
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | SLS BEAMLINE X06SA |
Synchrotron site | SLS |
Beamline | X06SA |
Temperature [K] | 90 |
Detector technology | PIXEL |
Collection date | 2008-04-22 |
Detector | PSI PILATUS 6M |
Wavelength(s) | 0.85 |
Spacegroup name | P 43 |
Unit cell lengths | 29.560, 29.560, 76.160 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 27.557 - 0.960 |
R-factor | 0.15 |
Rwork | 0.149 |
R-free | 0.16500 |
Starting model (for MR) | 1q9a |
RMSD bond length | 0.004 |
RMSD bond angle | 1.141 |
Data reduction software | XDS |
Data scaling software | XSCALE |
Phasing software | MOLREP |
Refinement software | PHENIX |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 0.970 | |
High resolution limit [Å] | 0.960 | 0.960 |
Number of reflections | 39656 | 1123 |
<I/σ(I)> | 34.5 | 3.1 |
Completeness [%] | 99.8 | 92.9 |
Redundancy | 11.9 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 7 | 293 | 3.2 M (NH4)2SO4, 50 mM K-MOPS pH 7.0, 10 mM MgCl2, 10 mM MnCl2, vapor diffusion, hanging drop, temperature 293K |
Crystallization Reagents
ID | crystal ID | solution ID | reagent name | concentration | details |
1 | 1 | 1 | (NH4)2SO4 | ||
10 | 1 | 2 | H2O | ||
2 | 1 | 1 | K-MOPS | ||
3 | 1 | 1 | MgCl2 | ||
4 | 1 | 1 | MnCl2 | ||
5 | 1 | 1 | H2O | ||
6 | 1 | 2 | (NH4)2SO4 | ||
7 | 1 | 2 | K-MOPS | ||
8 | 1 | 2 | MgCl2 | ||
9 | 1 | 2 | MnCl2 |