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3DVO

SgrAI with cognate DNA and calcium bound

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsSSRL BEAMLINE BL9-2
Synchrotron siteSSRL
BeamlineBL9-2
Spacegroup nameP 1 21 1
Unit cell lengths59.136, 119.248, 123.799
Unit cell angles90.00, 95.62, 90.00
Refinement procedure
Resolution41.068 - 1.892
R-factor0.2211
Rwork0.220
R-free0.27320
Structure solution methodMOLECULAR REPLACEMENT
Starting model (for MR)3dpg
RMSD bond length0.008
RMSD bond angle1.255
Refinement softwarePHENIX ((phenix.refine))
Data quality characteristics
 Overall
High resolution limit [Å]1.890
Rmerge0.120
Number of reflections126080
<I/σ(I)>6.5
Completeness [%]92.8
Redundancy3.4
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, HANGING DROP290PEG4000, buffer, NaCl, CaCl2, VAPOR DIFFUSION, HANGING DROP, temperature 290K
Crystallization Reagents
IDcrystal IDsolution IDreagent nameconcentrationdetails
111PEG4000
211NaCl
311CaCl2
412PEG4000
512NaCl
612CaCl2

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PDB entries from 2024-07-31

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