3DP9
Crystal structure of Vibrio cholerae 5'-methylthioadenosine/S-adenosyl homocysteine nucleosidase (MTAN) complexed with butylthio-DADMe-Immucillin A
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | NSLS BEAMLINE X29A |
Synchrotron site | NSLS |
Beamline | X29A |
Temperature [K] | 100 |
Detector technology | CCD |
Collection date | 2006-09-11 |
Detector | ADSC QUANTUM 315 |
Wavelength(s) | 1.10000 |
Spacegroup name | P 1 21 1 |
Unit cell lengths | 67.738, 54.332, 69.786 |
Unit cell angles | 90.00, 115.35, 90.00 |
Refinement procedure
Resolution | 31.530 - 2.300 |
R-factor | 0.20302 |
Rwork | 0.200 |
R-free | 0.26406 |
Structure solution method | FOURIER SYNTHESIS |
RMSD bond length | 0.010 |
RMSD bond angle | 1.319 |
Data reduction software | DENZO |
Data scaling software | SCALEPACK |
Phasing software | REFMAC (5.4.0069) |
Refinement software | REFMAC (5.4.0069) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 50.000 | 50.000 | 2.380 |
High resolution limit [Å] | 2.300 | 4.950 | 2.300 |
Rmerge | 0.066 | 0.047 | 0.188 |
Number of reflections | 18733 | ||
<I/σ(I)> | 15.1 | ||
Completeness [%] | 90.8 | 99.8 | 79.7 |
Redundancy | 3.8 | 4 | 2.9 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 7 | 291 | 0.2M Potassium iodide, 20% PEG 3350, pH 7.0, VAPOR DIFFUSION, SITTING DROP, temperature 291K |