3DLM
Crystal structure of Tudor domain of human Histone-lysine N-methyltransferase SETDB1
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | ROTATING ANODE |
Source details | RIGAKU FR-E+ DW |
Temperature [K] | 100 |
Detector technology | IMAGE PLATE |
Collection date | 2008-06-20 |
Detector | RIGAKU RAXIS IV |
Wavelength(s) | 1.54178 |
Spacegroup name | P 21 21 21 |
Unit cell lengths | 54.518, 63.689, 69.083 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 46.830 - 1.770 |
R-factor | 0.21 |
Rwork | 0.208 |
R-free | 0.23700 |
Structure solution method | SAD |
RMSD bond length | 0.013 |
RMSD bond angle | 1.369 |
Data reduction software | DENZO |
Data scaling software | SCALEPACK |
Phasing software | SHELXD |
Refinement software | REFMAC (5.2.0019) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 50.000 | 50.000 | 1.830 |
High resolution limit [Å] | 1.770 | 3.810 | 1.770 |
Rmerge | 0.049 | 0.039 | 0.178 |
Number of reflections | 24050 | ||
<I/σ(I)> | 42.6 | ||
Completeness [%] | 99.7 | 99.1 | 99.6 |
Redundancy | 6.9 | 6.8 | 6.6 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 7.5 | 293 | 1.5 microliter of the protein solution was mixed with 1.5 microliter of the reservoir solution containing 0.2 M Disodium tartrate, 20% PEG 3350 and 0.1M Hepes pH 7.5, VAPOR DIFFUSION, HANGING DROP, temperature 293K |