3BMX
Beta-N-hexosaminidase (YbbD) from Bacillus subtilis
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | SLS BEAMLINE X06SA |
Synchrotron site | SLS |
Beamline | X06SA |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2007-04-20 |
Detector | PSI PILATUS 6M |
Wavelength(s) | 0.99989 |
Spacegroup name | P 1 |
Unit cell lengths | 58.385, 73.085, 83.567 |
Unit cell angles | 79.79, 69.61, 88.25 |
Refinement procedure
Resolution | 42.835 - 1.400 |
R-factor | 0.129 |
Rwork | 0.127 |
R-free | 0.16600 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | PDB entries: 1EX1 1IIX 1j8v 1lq2 1x38 |
RMSD bond length | 0.007 |
RMSD bond angle | 0.967 |
Data reduction software | XDS |
Data scaling software | XSCALE |
Phasing software | PHASER |
Refinement software | PHENIX ((phenix.refine)) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 43.000 | 1.500 |
High resolution limit [Å] | 1.400 | 1.400 |
Rmerge | 0.084 | 0.605 |
Number of reflections | 227962 | |
<I/σ(I)> | 13.25 | 2.65 |
Completeness [%] | 90.8 | 53.7 |
Redundancy | 7 | 2.66 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 4.9 | 291 | 0.1M sodium acetate, 30-33 % PEG 1000, pH 4.9, VAPOR DIFFUSION, HANGING DROP, temperature 291K |