Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help

3BAM

RESTRICTION ENDONUCLEASE BAMHI COMPLEX WITH DNA AND MANGANESE IONS (POST-REACTIVE COMPLEX)

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsCHESS BEAMLINE F1
Synchrotron siteCHESS
BeamlineF1
Temperature [K]110
Detector technologyIMAGE PLATE
Spacegroup nameP 21 21 21
Unit cell lengths106.400, 79.600, 67.600
Unit cell angles90.00, 90.00, 90.00
Refinement procedure
Resolution8.000 - 1.800
R-factor0.226
Rwork0.226
R-free0.26800
Structure solution methodMOLECULAR REPLACEMENT
Starting model (for MR)1bhm
RMSD bond length0.010
RMSD bond angle1.700
Data reduction softwareDENZO
Data scaling softwareSCALEPACK
Phasing softwareX-PLOR
Refinement softwareX-PLOR (3.851)
Data quality characteristics
 OverallOuter shell
Low resolution limit [Å]40.000
High resolution limit [Å]1.800
Rmerge0.0840.318

*

Total number of observations111430

*

Number of reflections40212
<I/σ(I)>8.09
Completeness [%]72.045.6

*

Redundancy2.77
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1Vapor diffusion, hanging drop

*

5.320

*

pH 5.3 CATALYSIS OCCURRED IN THE CRYSTAL AFTER SOAKING MANGANESE ION. THE ACTIVE SITE OF THE R SUBUNIT CLEAVED THE ORIGINAL D STRAND IN TWO (D AND E) RESULTING IN A POST-REACTIVE COMPLEX.
Crystallization Reagents in Literatures
IDcrystal IDsolutionreagent nameconcentration (unit)details
11dropprotein20-25 (mg/ml)
101reservoir0.15 (M)
111reservoirMES0.1 (M)pH5.3
121reservoirglycerol5 (%)
21drop0.5 (M)
31droppotassium phosphate20 (mM)pH6.9
41dropdithiothreitol1 (mM)
51dropglycerol10 (%)
61dropDNA10 (mg/ml)
71dropPEG800012-14 (%)
81dropMES0.1 (M)pH5.3
91reservoirPEG800012-14 (%)

220113

PDB entries from 2024-05-22

PDB statisticsPDBj update infoContact PDBjnumon