3BA3
Crystal structure of Pyridoxamine 5'-phosphate oxidase-like protein (NP_783940.1) from Lactobacillus plantarum at 1.55 A resolution
Experimental procedure
Experimental method | MAD |
Source type | SYNCHROTRON |
Source details | ALS BEAMLINE 8.2.1 |
Synchrotron site | ALS |
Beamline | 8.2.1 |
Temperature [K] | 100 |
Detector technology | CCD |
Collection date | 2007-09-17 |
Detector | ADSC QUANTUM 315 |
Wavelength(s) | 1.0000, 0.9797 |
Spacegroup name | P 43 3 2 |
Unit cell lengths | 137.379, 137.379, 137.379 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 29.975 - 1.550 |
R-factor | 0.171 |
Rwork | 0.170 |
R-free | 0.19600 |
Structure solution method | MAD |
RMSD bond length | 0.018 |
RMSD bond angle | 1.684 |
Data reduction software | MOSFLM |
Data scaling software | SCALA |
Phasing software | SOLVE |
Refinement software | REFMAC (5.3.0040) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 29.975 | 29.975 | 1.590 |
High resolution limit [Å] | 1.550 | 6.930 | 1.550 |
Rmerge | 0.083 | 0.039 | 0.913 |
Total number of observations | 7962 | 43050 | |
Number of reflections | 64534 | ||
<I/σ(I)> | 5.4 | 12.9 | 0.9 |
Completeness [%] | 100.0 | 98.8 | 100 |
Redundancy | 10.1 | 9.3 | 9.2 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 7 | 277 | NANODROP, 2.0M (NH4)2SO4, 0.2M Li2SO4, 0.1M Tris-HCl pH 7.0, VAPOR DIFFUSION, SITTING DROP, temperature 277K |