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3ZRH

Crystal structure of the Lys29, Lys33-linkage-specific TRABID OTU deubiquitinase domain reveals an Ankyrin-repeat ubiquitin binding domain (AnkUBD)

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsESRF BEAMLINE ID23-2
Synchrotron siteESRF
BeamlineID23-2
Temperature [K]100
Detector technologyCCD
Collection date2008-11-29
Spacegroup nameP 21 21 21
Unit cell lengths60.400, 72.150, 133.010
Unit cell angles90.00, 90.00, 90.00
Refinement procedure
Resolution44.712 - 2.230
R-factor0.2035
Rwork0.200
R-free0.24780
Structure solution methodSIRAS
Starting model (for MR)NONE
RMSD bond length0.013
RMSD bond angle1.413
Data reduction softwareMOSFLM
Data scaling softwareSCALA
Phasing softwareSHARP
Refinement softwarePHENIX ((PHENIX.REFINE: DEV_764))
Data quality characteristics
 OverallOuter shell
Low resolution limit [Å]46.3202.350
High resolution limit [Å]2.2302.230
Rmerge0.0800.490
Number of reflections29095
<I/σ(I)>12.12.7
Completeness [%]100.0100
Redundancy4.14.1
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
15.9150 MM NACL, 100 MM NAOAC, 5 MM MGCL2, 50 MM MES [PH 5.9]

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PDB entries from 2024-05-15

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