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3ZDX

Integrin alphaIIB beta3 headpiece and RGD peptide complex

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsAPS BEAMLINE 23-ID
Synchrotron siteAPS
Beamline23-ID
Temperature [K]100
Detector technologyCCD
DetectorMARRESEARCH
Spacegroup nameP 21 21 2
Unit cell lengths259.710, 144.960, 104.770
Unit cell angles90.00, 90.00, 90.00
Refinement procedure
Resolution48.361 - 2.450
R-factor0.163
Rwork0.163
R-free0.19710
Structure solution methodFOURIER SYNTHESIS
Starting model (for MR)3t3p
RMSD bond length0.007
RMSD bond angle0.658
Data reduction softwareXDS
Data scaling softwareXDS
Phasing softwarePHENIX
Refinement softwarePHENIX ((PHENIX.REFINE))
Data quality characteristics
 OverallOuter shell
Low resolution limit [Å]50.0002.580
High resolution limit [Å]2.4502.450
Rmerge0.1500.810
Number of reflections145557
<I/σ(I)>10.22.8
Completeness [%]99.999.9
Redundancy7.5
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
18.911% PEG 8000, 0.2 M AMMONIUM SULFATE, 0.1 M TRIS-HCL, PH 8.9

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PDB entries from 2024-05-15

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