3WB9
Crystal Structures of meso-diaminopimelate dehydrogenase from Symbiobacterium thermophilum
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | ROTATING ANODE |
Source details | RIGAKU |
Temperature [K] | 100 |
Detector technology | IMAGE PLATE |
Collection date | 2012-11-15 |
Detector | RIGAKU RAXIS IV++ |
Wavelength(s) | 1.5419 |
Spacegroup name | C 1 2 1 |
Unit cell lengths | 126.249, 99.450, 80.822 |
Unit cell angles | 90.00, 107.69, 90.00 |
Refinement procedure
Resolution | 50.000 - 1.930 |
Rwork | 0.171 |
R-free | 0.20570 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 3bio |
Data reduction software | DENZO |
Data scaling software | SCALEPACK |
Phasing software | MOLREP |
Refinement software | CNS |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 50.000 | 50.000 | 1.960 |
High resolution limit [Å] | 1.930 | 5.240 | 1.930 |
Rmerge | 0.058 | 0.047 | 0.198 |
Number of reflections | 71273 | ||
<I/σ(I)> | 21.4 | ||
Completeness [%] | 99.7 | 100 | 97.5 |
Redundancy | 8.6 | 8.7 | 7.5 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 7.5 | 298 | MPD, Glycerol, NaCl, pH 7.5, VAPOR DIFFUSION, SITTING DROP, temperature 298K |