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3WB9

Crystal Structures of meso-diaminopimelate dehydrogenase from Symbiobacterium thermophilum

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeROTATING ANODE
Source detailsRIGAKU
Temperature [K]100
Detector technologyIMAGE PLATE
Collection date2012-11-15
DetectorRIGAKU RAXIS IV++
Wavelength(s)1.5419
Spacegroup nameC 1 2 1
Unit cell lengths126.249, 99.450, 80.822
Unit cell angles90.00, 107.69, 90.00
Refinement procedure
Resolution50.000 - 1.930
Rwork0.171
R-free0.20570
Structure solution methodMOLECULAR REPLACEMENT
Starting model (for MR)3bio
Data reduction softwareDENZO
Data scaling softwareSCALEPACK
Phasing softwareMOLREP
Refinement softwareCNS
Data quality characteristics
 OverallInner shellOuter shell
Low resolution limit [Å]50.00050.0001.960
High resolution limit [Å]1.9305.2401.930
Rmerge0.0580.0470.198
Number of reflections71273
<I/σ(I)>21.4
Completeness [%]99.710097.5
Redundancy8.68.77.5
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, SITTING DROP7.5298MPD, Glycerol, NaCl, pH 7.5, VAPOR DIFFUSION, SITTING DROP, temperature 298K

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PDB entries from 2024-05-15

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