3VR4
Crystal structure of Enterococcus hirae V1-ATPase [eV1]
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | PHOTON FACTORY BEAMLINE AR-NW12A |
Synchrotron site | Photon Factory |
Beamline | AR-NW12A |
Temperature [K] | 100 |
Detector technology | CCD |
Collection date | 2009-12-16 |
Detector | ADSC QUANTUM 210r |
Wavelength(s) | 0.97919 |
Spacegroup name | P 21 21 21 |
Unit cell lengths | 127.980, 128.480, 225.930 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 34.042 - 2.172 |
R-factor | 0.1685 |
Rwork | 0.167 |
R-free | 0.21080 |
Structure solution method | MOLECULAR REPLACEMENT and SAD |
Starting model (for MR) | 3vr2 3aon 3a5c |
RMSD bond length | 0.003 |
RMSD bond angle | 0.738 |
Data reduction software | XDS |
Data scaling software | XDS |
Phasing software | PHASER |
Refinement software | PHENIX ((phenix.refine: dev_934)) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 37.120 | 2.230 |
High resolution limit [Å] | 2.170 | 2.170 |
Rmerge | 0.090 | 0.535 |
Number of reflections | 195452 | |
<I/σ(I)> | 16.8 | 3.7 |
Completeness [%] | 99.7 | 97.1 |
Redundancy | 7.4 | 7.2 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 6.5 | 296 | 29.2% PEG3350, 0.1M NaF, 0.1M Bis-Tris propane, pH 6.5, VAPOR DIFFUSION, SITTING DROP, temperature 296K |
1 | VAPOR DIFFUSION, SITTING DROP | 6.5 | 296 | 29.2% PEG3350, 0.1M NaF, 0.1M Bis-Tris propane, pH 6.5, VAPOR DIFFUSION, SITTING DROP, temperature 296K |