3TT4
Human MMP8 in complex with L-glutamate motif inhibitor
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | ESRF BEAMLINE ID23-1 |
Synchrotron site | ESRF |
Beamline | ID23-1 |
Temperature [K] | 100 |
Detector technology | CCD |
Collection date | 2011-06-13 |
Detector | ADSC QUANTUM 315r |
Wavelength(s) | 0.97242 |
Spacegroup name | P 21 21 21 |
Unit cell lengths | 32.719, 69.369, 70.312 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 34.690 - 1.880 |
R-factor | 0.19409 |
Rwork | 0.191 |
R-free | 0.25780 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 2oy2 |
RMSD bond length | 0.022 |
RMSD bond angle | 2.012 |
Data reduction software | XDS |
Data scaling software | XSCALE |
Phasing software | MOLREP |
Refinement software | REFMAC (5.5.0109) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 60.000 | 70.310 | 2.010 |
High resolution limit [Å] | 1.880 | 5.290 | 1.880 |
Rmerge | 0.247 | 0.091 | 1.026 |
Number of reflections | 13397 | ||
<I/σ(I)> | 8.9 | 26.01 | 2.08 |
Completeness [%] | 98.1 | 92.1 | 99.6 |
Redundancy | 5.26 | 4.9 | 5.2 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 5.5 | 293 | MMP-8 at 400 micro-M co-crystallization with peptidic inhibitor with reservoir solution 17.5% PEG 20K, 0.1 M MES, 0.125 M NACL. VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 293K. Inhibitor exchange: 24hr soak in 25% PEG 4K instead of 17.5% PEG20K with 100 micro-M E1S inhibitor in 6 micro-L volume cryoprotectant is 12% PEG10K, 13.75% MPEG2K, 5% di-ethylene glycol, 10% 1,2-propanediol, 10% glycerol, 0.025 M MES PH 5.5, 30 sec cryoprotectant soak |