Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help

3TT4

Human MMP8 in complex with L-glutamate motif inhibitor

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsESRF BEAMLINE ID23-1
Synchrotron siteESRF
BeamlineID23-1
Temperature [K]100
Detector technologyCCD
Collection date2011-06-13
DetectorADSC QUANTUM 315r
Wavelength(s)0.97242
Spacegroup nameP 21 21 21
Unit cell lengths32.719, 69.369, 70.312
Unit cell angles90.00, 90.00, 90.00
Refinement procedure
Resolution34.690 - 1.880
R-factor0.19409
Rwork0.191
R-free0.25780
Structure solution methodMOLECULAR REPLACEMENT
Starting model (for MR)2oy2
RMSD bond length0.022
RMSD bond angle2.012
Data reduction softwareXDS
Data scaling softwareXSCALE
Phasing softwareMOLREP
Refinement softwareREFMAC (5.5.0109)
Data quality characteristics
 OverallInner shellOuter shell
Low resolution limit [Å]60.00070.3102.010
High resolution limit [Å]1.8805.2901.880
Rmerge0.2470.0911.026
Number of reflections13397
<I/σ(I)>8.926.012.08
Completeness [%]98.192.199.6
Redundancy5.264.95.2
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, SITTING DROP5.5293MMP-8 at 400 micro-M co-crystallization with peptidic inhibitor with reservoir solution 17.5% PEG 20K, 0.1 M MES, 0.125 M NACL. VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 293K. Inhibitor exchange: 24hr soak in 25% PEG 4K instead of 17.5% PEG20K with 100 micro-M E1S inhibitor in 6 micro-L volume cryoprotectant is 12% PEG10K, 13.75% MPEG2K, 5% di-ethylene glycol, 10% 1,2-propanediol, 10% glycerol, 0.025 M MES PH 5.5, 30 sec cryoprotectant soak

219869

PDB entries from 2024-05-15

PDB statisticsPDBj update infoContact PDBjnumon