Loading
PDBj
MenuPDBj@FacebookPDBj@X(formerly Twitter)PDBj@BlueSkyPDBj@YouTubewwPDB FoundationwwPDBDonate
RCSB PDBPDBeBMRBAdv. SearchSearch help

3TND

Crystal structure of Shigella flexneri VapBC toxin-antitoxin complex

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsESRF BEAMLINE ID23-1
Synchrotron siteESRF
BeamlineID23-1
Temperature [K]100
Detector technologyCCD
Collection date2011-04-15
DetectorADSC QUANTUM 315r
Wavelength(s)0.94645
Spacegroup nameP 61 2 2
Unit cell lengths91.403, 91.403, 549.090
Unit cell angles90.00, 90.00, 120.00
Refinement procedure
Resolution39.615 - 2.700
R-factor0.1849
Rwork0.182
R-free0.23750
Structure solution methodSAD
RMSD bond length0.005
RMSD bond angle0.838
Data reduction softwareXDS
Data scaling softwareXSCALE
Phasing softwareSOLVE
Refinement softwarePHENIX ((phenix.refine: 1.7.1_743))
Data quality characteristics
 OverallInner shellOuter shell
Low resolution limit [Å]40.0005.8002.660
High resolution limit [Å]2.6005.1902.600
Number of reflections43720
Completeness [%]99.710097.3
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, SITTING DROP5.52920.1M Bis-tris, 1M ammonium sulphate, 0.5% (v/v) PEG 3350, pH 5.5, VAPOR DIFFUSION, SITTING DROP, temperature 292K
1VAPOR DIFFUSION, SITTING DROP5.52920.1M Bis-tris, 1M ammonium sulphate, 0.5% (v/v) PEG 3350, pH 5.5, VAPOR DIFFUSION, SITTING DROP, temperature 292K

246031

PDB entries from 2025-12-10

PDB statisticsPDBj update infoContact PDBjnumon