3R6B
Crystal Structure of Thrombospondin-1 TSR Domains 2 and 3
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | ROTATING ANODE |
Source details | RIGAKU MICROMAX-007 HF |
Temperature [K] | 93 |
Detector technology | CCD |
Collection date | 2011-03-15 |
Detector | RIGAKU SATURN 944+ |
Wavelength(s) | 1.5418 |
Spacegroup name | C 2 2 21 |
Unit cell lengths | 66.364, 84.817, 60.707 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 30.354 - 2.400 |
R-factor | 0.2387 |
Rwork | 0.235 |
R-free | 0.27290 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 1lsl |
RMSD bond length | 0.008 |
RMSD bond angle | 1.286 |
Data reduction software | d*TREK |
Data scaling software | d*TREK |
Phasing software | PHENIX (1.7_650) |
Refinement software | PHENIX ((phenix.refine: 1.7_650)) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 30.354 | 2.490 |
High resolution limit [Å] | 2.400 | 2.400 |
Rmerge | 0.065 | 0.227 |
Number of reflections | 6564 | |
<I/σ(I)> | 16.6 | 4.7 |
Completeness [%] | 94.0 | 87.6 |
Redundancy | 5.8 | 3.84 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 5 | 293 | 0.9M sodium potassium phosphate, pH 5.0, VAPOR DIFFUSION, SITTING DROP, temperature 293.0K |