3PVQ
Crystal structure of a putative dipeptidyl-peptidase VI (BT_1314) from BACTEROIDES THETAIOTAOMICRON VPI-5482 at 2.10 A resolution
Experimental procedure
Experimental method | MAD |
Source type | SYNCHROTRON |
Source details | ALS BEAMLINE 8.2.2 |
Synchrotron site | ALS |
Beamline | 8.2.2 |
Temperature [K] | 100 |
Detector technology | CCD |
Collection date | 2010-09-15 |
Detector | ADSC QUANTUM 315 |
Wavelength(s) | 0.9537,0.9796 |
Spacegroup name | P 1 21 1 |
Unit cell lengths | 64.919, 50.295, 107.562 |
Unit cell angles | 90.00, 93.50, 90.00 |
Refinement procedure
Resolution | 29.159 - 2.100 |
R-factor | 0.1664 |
Rwork | 0.165 |
R-free | 0.19820 |
Structure solution method | MAD |
RMSD bond length | 0.010 |
RMSD bond angle | 1.030 |
Data reduction software | XDS |
Data scaling software | XSCALE |
Phasing software | SHELX |
Refinement software | BUSTER-TNT (BUSTER 2.8.0) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 29.159 | 2.170 | |
High resolution limit [Å] | 2.100 | 4.510 | 2.100 |
Rmerge | 0.086 | 0.027 | 0.374 |
Number of reflections | 40250 | 7701 | 6398 |
<I/σ(I)> | 6.89 | 18.8 | 1.5 |
Completeness [%] | 91.0 | 96.1 | 86.6 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 277 | 20.0% Glycerol, 0.04M KH2PO4, 16.0% PEG-8000, No Buffer pH None, NANODROP, VAPOR DIFFUSION, SITTING DROP, temperature 277K |