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3P70

Structural basis of thrombin-mediated factor V activation: essential role of the hirudin-like sequence Glu666-Glu672 for processing at the heavy chain-B domain junction

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsESRF BEAMLINE ID23-2
Synchrotron siteESRF
BeamlineID23-2
Temperature [K]298
Detector technologyCCD
Collection date2010-02-19
DetectorMARMOSAIC 225 mm CCD
Wavelength(s)0.8726
Spacegroup nameP 1
Unit cell lengths62.243, 68.227, 98.972
Unit cell angles72.57, 84.05, 80.45
Refinement procedure
Resolution61.280 - 2.550
R-factor0.2105
Rwork0.207
R-free0.27881
Structure solution methodMOLECULAR REPLACEMENT
Starting model (for MR)1ppb
RMSD bond length0.016
RMSD bond angle1.841
Data reduction softwareMOSFLM
Data scaling softwareSCALA
Phasing softwareMOLREP
Refinement softwareREFMAC (5.5.0072)
Data quality characteristics
 OverallOuter shell
Low resolution limit [Å]64.4202.690
High resolution limit [Å]2.5502.550
Rmerge0.0800.426
Number of reflections47142
<I/σ(I)>10.82.7
Completeness [%]94.694.1
Redundancy3.63.6
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, HANGING DROP7.5293100 mM MOPS/HEPES-Na, pH 7.5, 12.5% (w/v) PEG 1000, 12.5% (w/v) PEG 3350, 12.5% (v/v) 2-methylpentane-2,4-diol (MPD), 20 mM D-glucose, 20 mM D-mannose, 20 mM D-galactose, 20 mM L-fucose, 20 mM D-xylose, 20 mM N-acetyl-D-glucosamine , VAPOR DIFFUSION, HANGING DROP, temperature 293K

219869

PDB entries from 2024-05-15

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