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3P1H

Crystal structure of Staphylococcal nuclease variant Delta+PHS V23K/I92A at cryogenic temperature

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsNSLS BEAMLINE X25
Synchrotron siteNSLS
BeamlineX25
Temperature [K]100
Detector technologyCCD
Collection date2009-07-01
DetectorADSC QUANTUM 315
Wavelength(s)0.97950
Spacegroup nameP 1 21 1
Unit cell lengths31.131, 60.448, 37.972
Unit cell angles90.00, 93.56, 90.00
Refinement procedure
Resolution22.940 - 1.790
R-factor0.1841
Rwork0.179
R-free0.23070
Structure solution methodMOLECULAR REPLACEMENT
Starting model (for MR)PDB ID: 3BDC Residues 7-141 deleted waters and cofactors all B factors set to 20.00 A2 truncated: H8A T13A V23A Q30A K64A T82A I92A Y113A V114A Y115A
RMSD bond length0.014
RMSD bond angle1.499
Data reduction softwareHKL-2000
Data scaling softwareSCALEPACK
Phasing softwarePHASER (2.1.4)
Refinement softwareREFMAC
Data quality characteristics
 OverallInner shellOuter shell
Low resolution limit [Å]50.00050.0001.820
High resolution limit [Å]1.7904.8601.790
Rmerge0.0750.0550.280
Number of reflections13067
<I/σ(I)>14.7
Completeness [%]98.089.997
Redundancy11.89.912.4
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, HANGING DROP927727% MPD, 25 mM Potassium Phosphate, Calcium Chloride, pdTp, pH 9.0, VAPOR DIFFUSION, HANGING DROP, temperature 277K

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PDB entries from 2024-05-15

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