3NJY
Crystal structure of JMJD2A complexed with 5-carboxy-8-hydroxyquinoline
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | DIAMOND BEAMLINE I04 |
Synchrotron site | Diamond |
Beamline | I04 |
Temperature [K] | 100 |
Detector technology | CCD |
Collection date | 2009-12-14 |
Detector | ADSC QUANTUM 315 |
Wavelength(s) | 0.97860 |
Spacegroup name | P 21 21 2 |
Unit cell lengths | 100.550, 148.990, 56.910 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 37.678 - 2.600 |
R-factor | 0.1823 |
Rwork | 0.180 |
R-free | 0.22590 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 2oq6 |
RMSD bond length | 0.015 |
RMSD bond angle | 1.097 |
Data reduction software | MOSFLM |
Data scaling software | SCALA (CCP4_3.3.16) |
Phasing software | PHASER |
Refinement software | PHENIX (1.6_289) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 41.240 | 41.240 | 2.740 |
High resolution limit [Å] | 2.600 | 8.220 | 2.600 |
Rmerge | 0.111 | 0.070 | 0.400 |
Total number of observations | 3821 | 16405 | |
Number of reflections | 26805 | ||
<I/σ(I)> | 9.4073 | ||
Completeness [%] | 99.0 | 97.08 | 97.09 |
Redundancy | 4.44 | 4.13 | 4.37 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 5.5 | 277 | 0.1M CITRATE, 4mM NiCl2, 20% PEG 3350, pH 5.5, VAPOR DIFFUSION, SITTING DROP, temperature 277K |