3HMQ
1.9 Angstrom resolution crystal structure of a NAD synthetase (nadE) from Salmonella typhimurium LT2 in complex with NAD(+)
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | APS BEAMLINE 21-ID-G |
Synchrotron site | APS |
Beamline | 21-ID-G |
Temperature [K] | 100 |
Detector technology | CCD |
Collection date | 2009-04-16 |
Detector | MARMOSAIC 300 mm CCD |
Wavelength(s) | 0.979 |
Spacegroup name | P 31 2 1 |
Unit cell lengths | 91.820, 91.820, 75.050 |
Unit cell angles | 90.00, 90.00, 120.00 |
Refinement procedure
Resolution | 29.060 - 1.900 |
R-factor | 0.14611 |
Rwork | 0.144 |
R-free | 0.18660 |
Structure solution method | SAD |
RMSD bond length | 0.011 |
RMSD bond angle | 1.374 |
Data reduction software | XDS |
Data scaling software | XSCALE |
Phasing software | Structure (Solution Crank (SHELXC) |
Refinement software | REFMAC (5.5.0051) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 29.060 | 1.930 |
High resolution limit [Å] | 1.900 | 1.900 |
Rmerge | 0.504 | |
Number of reflections | 29311 | |
<I/σ(I)> | 13.7 | 2.8 |
Completeness [%] | 99.7 | 99.9 |
Redundancy | 10.1 | 9.4 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 5.5 | 295 | protein in 300mM NaCl, 10mM Hepes Na pH 7.5, 0.5mM TCEP was mixed at 1:1 v/v ratio with NH4Sulphat 2M, Bis-Tris 0.1m pH 5.5, 10mm NAD-magic solution, VAPOR DIFFUSION, SITTING DROP, temperature 295K |