3GMP
Structure of mouse CD1d in complex with PBS-25
Experimental procedure
| Experimental method | SINGLE WAVELENGTH |
| Source type | SYNCHROTRON |
| Source details | SSRL BEAMLINE BL11-1 |
| Synchrotron site | SSRL |
| Beamline | BL11-1 |
| Temperature [K] | 100 |
| Detector technology | CCD |
| Collection date | 2008-04-14 |
| Detector | MARMOSAIC 325 mm CCD |
| Wavelength(s) | 0.9795 |
| Spacegroup name | P 1 21 1 |
| Unit cell lengths | 41.710, 97.730, 55.490 |
| Unit cell angles | 90.00, 106.52, 90.00 |
Refinement procedure
| Resolution | 27.780 - 1.700 |
| R-factor | 0.17784 |
| Rwork | 0.176 |
| R-free | 0.21569 |
| Structure solution method | MOLECULAR REPLACEMENT |
| Starting model (for MR) | 3gml |
| RMSD bond length | 0.022 |
| RMSD bond angle | 2.099 |
| Data reduction software | XDS |
| Data scaling software | XSCALE |
| Phasing software | PHASER |
| Refinement software | REFMAC (5.5.0066) |
Data quality characteristics
| Overall | Outer shell | |
| Low resolution limit [Å] | 30.000 | 1.800 |
| High resolution limit [Å] | 1.700 | 1.700 |
| Number of reflections | 46664 | |
| <I/σ(I)> | 23.3 | 4 |
| Completeness [%] | 99.5 | 98.8 |
| Redundancy | 4.1 | 3.9 |
Crystallization Conditions
| crystal ID | method | pH | temperature | details |
| 1 | VAPOR DIFFUSION, SITTING DROP | 4.5 | 295 | 0.2 M Malonate pH 4.5, 20%(v/v) PEG3350, VAPOR DIFFUSION, SITTING DROP, temperature 295K |
