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3G4K

Crystal structure of human phosphodiesterase 4d with rolipram

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsALS BEAMLINE 5.0.1
Synchrotron siteALS
Beamline5.0.1
Temperature [K]100
Wavelength(s)0.97
Spacegroup nameP 21 21 21
Unit cell lengths98.611, 112.758, 160.034
Unit cell angles90.00, 90.00, 90.00
Refinement procedure
Resolution50.000 - 1.950
R-factor0.185
Rwork0.183
R-free0.21500
Structure solution methodMOLECULAR REPLACEMENT
RMSD bond length0.010
RMSD bond angle1.173
Data reduction softwareHKL-2000
Data scaling softwareHKL-2000
Phasing softwareMOLREP
Refinement softwareREFMAC (5.2.0019)
Data quality characteristics
 OverallOuter shell
Low resolution limit [Å]50.0001.980
High resolution limit [Å]1.9501.950
Rmerge0.0660.699
Number of reflections131239
<I/σ(I)>11.5
Completeness [%]99.6100
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, SITTING DROP7.5293100MM HEPES PH 7.5, 35% ETHYLENE GLYCOL, 5% GLYCEROL, 22% PEG 3350, VAPOR DIFFUSION, SITTING DROP, temperature 293K

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PDB entries from 2024-05-15

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