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3EAE

PWWP domain of human hepatoma-derived growth factor 2 (HDGF2)

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsAPS BEAMLINE 19-ID
Synchrotron siteAPS
Beamline19-ID
Temperature [K]200
Detector technologyCCD
DetectorADSC QUANTUM 315
Wavelength(s)0.97940
Spacegroup nameP 21 21 21
Unit cell lengths41.555, 59.950, 104.942
Unit cell angles90.00, 90.00, 90.00
Refinement procedure
Resolution40.000 - 2.240
R-factor0.225
Rwork0.224
R-free0.26000
Structure solution methodMOLECULAR REPLACEMENT
Starting model (for MR)PDB Entries 2HTS and 2NLU
RMSD bond length0.012
RMSD bond angle1.261
Data reduction softwareDENZO
Data scaling softwareSCALEPACK
Refinement softwareREFMAC (5.2.0019)
Data quality characteristics
 OverallInner shellOuter shell
Low resolution limit [Å]40.00040.0002.340
High resolution limit [Å]2.2406.2402.300
Rmerge0.0840.0470.647
Number of reflections12780
<I/σ(I)>19.947
Completeness [%]99.797.198.5
Redundancy6.96.26.4
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, HANGING DROP5.62982.0 M NH4SO4, 0.2 M K/Na tart, 0.1 M Na Citrate pH 5.6., VAPOR DIFFUSION, HANGING DROP, temperature 298K

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PDB entries from 2024-05-15

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