3DON
Crystal structure of shikimate dehydrogenase from Staphylococcus epidermidis
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | ROTATING ANODE |
Source details | RIGAKU |
Temperature [K] | 100 |
Detector technology | IMAGE PLATE |
Collection date | 2008-01-05 |
Detector | RIGAKU RAXIS IV++ |
Wavelength(s) | 1.5418 |
Spacegroup name | P 21 21 21 |
Unit cell lengths | 52.877, 54.153, 102.724 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 15.000 - 2.100 |
R-factor | 0.187 |
Rwork | 0.183 |
R-free | 0.26000 |
Structure solution method | MAD |
RMSD bond length | 0.020 |
RMSD bond angle | 1.723 |
Data reduction software | d*TREK |
Data scaling software | d*TREK (7.1SSI) |
Phasing software | SOLVE |
Refinement software | REFMAC |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 47.900 | 2.180 |
High resolution limit [Å] | 2.100 | 2.100 |
Rmerge | 0.100 | 0.334 |
Total number of observations | 10094 | |
Number of reflections | 17458 | |
<I/σ(I)> | 5.9 | 2 |
Completeness [%] | 97.9 | 98.8 |
Redundancy | 5.57 | 5.82 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 5.8 | 277 | 0.1M tri-Sodium Citrate dihydrate pH 5.8, 24% PEG 4000, 0.2M Ammonium Acetate, VAPOR DIFFUSION, HANGING DROP, temperature 277K |
1 | VAPOR DIFFUSION, HANGING DROP | 5.8 | 277 | 0.1M tri-Sodium Citrate dihydrate pH 5.8, 24% PEG 4000, 0.2M Ammonium Acetate, VAPOR DIFFUSION, HANGING DROP, temperature 277K |