3DKL
Crystal structure of phosphorylated mimic form of human NAMPT complexed with benzamide and phosphoribosyl pyrophosphate
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | NSLS BEAMLINE X29A |
Synchrotron site | NSLS |
Beamline | X29A |
Temperature [K] | 100 |
Detector technology | CCD |
Collection date | 2008-04-17 |
Detector | ADSC QUANTUM 315 |
Wavelength(s) | 1.08090 |
Spacegroup name | P 1 21 1 |
Unit cell lengths | 61.127, 106.589, 83.240 |
Unit cell angles | 90.00, 96.78, 90.00 |
Refinement procedure
Resolution | 28.560 - 1.890 |
R-factor | 0.179 |
Rwork | 0.177 |
R-free | 0.21400 |
Structure solution method | FOURIER SYNTHESIS |
Starting model (for MR) | 3dhf |
RMSD bond length | 0.019 |
RMSD bond angle | 1.693 |
Data reduction software | DENZO |
Data scaling software | SCALEPACK |
Phasing software | REFMAC (5.2.0019) |
Refinement software | REFMAC (5.2.0019) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 50.000 | 50.000 | 1.970 |
High resolution limit [Å] | 1.890 | 4.090 | 1.890 |
Rmerge | 0.082 | 0.054 | 0.358 |
Number of reflections | 81779 | ||
<I/σ(I)> | 7.1 | ||
Completeness [%] | 97.2 | 99.7 | 82 |
Redundancy | 3.9 | 4.1 | 2.7 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 8.5 | 291 | 200mM NaCl, 100mM Tris-HCl, 15% PEG 3350, 20% Glycerol, pH 8.5, VAPOR DIFFUSION, SITTING DROP, temperature 291K |