Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help

3DKL

Crystal structure of phosphorylated mimic form of human NAMPT complexed with benzamide and phosphoribosyl pyrophosphate

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsNSLS BEAMLINE X29A
Synchrotron siteNSLS
BeamlineX29A
Temperature [K]100
Detector technologyCCD
Collection date2008-04-17
DetectorADSC QUANTUM 315
Wavelength(s)1.08090
Spacegroup nameP 1 21 1
Unit cell lengths61.127, 106.589, 83.240
Unit cell angles90.00, 96.78, 90.00
Refinement procedure
Resolution28.560 - 1.890
R-factor0.179
Rwork0.177
R-free0.21400
Structure solution methodFOURIER SYNTHESIS
Starting model (for MR)3dhf
RMSD bond length0.019
RMSD bond angle1.693
Data reduction softwareDENZO
Data scaling softwareSCALEPACK
Phasing softwareREFMAC (5.2.0019)
Refinement softwareREFMAC (5.2.0019)
Data quality characteristics
 OverallInner shellOuter shell
Low resolution limit [Å]50.00050.0001.970
High resolution limit [Å]1.8904.0901.890
Rmerge0.0820.0540.358
Number of reflections81779
<I/σ(I)>7.1
Completeness [%]97.299.782
Redundancy3.94.12.7
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, SITTING DROP8.5291200mM NaCl, 100mM Tris-HCl, 15% PEG 3350, 20% Glycerol, pH 8.5, VAPOR DIFFUSION, SITTING DROP, temperature 291K

219869

PDB entries from 2024-05-15

PDB statisticsPDBj update infoContact PDBjnumon