3D53
2.2 A crystal structure of inorganic pyrophosphatase from Rickettsia prowazekii
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | ALS BEAMLINE 5.0.1 |
Synchrotron site | ALS |
Beamline | 5.0.1 |
Temperature [K] | 100 |
Detector technology | CCD |
Collection date | 2008-04-25 |
Detector | ADSC QUANTUM 210 |
Wavelength(s) | 0.977408 |
Spacegroup name | P 21 21 21 |
Unit cell lengths | 68.970, 115.230, 139.730 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 33.560 - 2.200 |
R-factor | 0.22 |
Rwork | 0.217 |
R-free | 0.28000 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 2eip |
RMSD bond length | 0.010 |
RMSD bond angle | 1.277 |
Data reduction software | MOSFLM |
Data scaling software | SCALA (3.2.25) |
Phasing software | PHASER |
Refinement software | REFMAC |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 34.940 | 34.940 | 2.320 |
High resolution limit [Å] | 2.200 | 6.960 | 2.200 |
Rmerge | 0.132 | 0.052 | 0.524 |
Total number of observations | 11302 | 46907 | |
Number of reflections | 56518 | ||
<I/σ(I)> | 5 | 9.9 | 1.5 |
Completeness [%] | 98.8 | 98.7 | 97.6 |
Redundancy | 6.2 | 5.8 | 5.9 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION | 4.5 | 293 | 2.5M NaCl, 0.1M Na acetate pH 4.5, 0.2M Li2SO4, VAPOR DIFFUSION, temperature 293K |