3CDM
Structural adaptation and conservation in quadruplex-drug recognition
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | ESRF BEAMLINE ID14-1 |
Synchrotron site | ESRF |
Beamline | ID14-1 |
Temperature [K] | 100 |
Detector technology | CCD |
Collection date | 2007-10-07 |
Detector | ADSC QUANTUM 210 |
Wavelength(s) | 0.9785 |
Spacegroup name | P 1 21 1 |
Unit cell lengths | 39.575, 43.084, 56.937 |
Unit cell angles | 90.00, 103.58, 90.00 |
Refinement procedure
Resolution | 10.000 - 2.100 |
R-factor | 0.23409 |
Rwork | 0.234 |
R-free | 0.29491 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 1kf1 |
RMSD bond length | 0.019 |
RMSD bond angle | 2.804 |
Data reduction software | d*TREK |
Data scaling software | d*TREK |
Phasing software | PHASER |
Refinement software | REFMAC (5.2.0019) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 28.690 | 2.180 |
High resolution limit [Å] | 2.100 | 2.100 |
Rmerge | 0.036 | 0.116 |
Number of reflections | 10055 | |
<I/σ(I)> | 17.9 | 6.4 |
Completeness [%] | 91.0 | 95.9 |
Redundancy | 2.86 | 2.94 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 6.5 | 283 | 333mM ammonium sulfate, 10mM magnesium chloride, 50mM sodium chloride, 50mM potassium chloride, 50mM potassium cacodylate pH 6.5, VAPOR DIFFUSION, HANGING DROP, temperature 283K |
Crystallization Reagents
ID | crystal ID | solution ID | reagent name | concentration | details |
1 | 1 | 1 | ammonium sulphate | ||
10 | 1 | 2 | potassium chloride | ||
11 | 1 | 2 | potassium cacodylate | ||
12 | 1 | 2 | HOH | ||
2 | 1 | 1 | magnesium chloride | ||
3 | 1 | 1 | sodium chloride | ||
4 | 1 | 1 | potassium chloride | ||
5 | 1 | 1 | potassium cacodylate | ||
6 | 1 | 1 | HOH | ||
7 | 1 | 2 | ammonium sulphate | ||
8 | 1 | 2 | magnesium chloride | ||
9 | 1 | 2 | sodium chloride |