Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help

3CDM

Structural adaptation and conservation in quadruplex-drug recognition

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsESRF BEAMLINE ID14-1
Synchrotron siteESRF
BeamlineID14-1
Temperature [K]100
Detector technologyCCD
Collection date2007-10-07
DetectorADSC QUANTUM 210
Wavelength(s)0.9785
Spacegroup nameP 1 21 1
Unit cell lengths39.575, 43.084, 56.937
Unit cell angles90.00, 103.58, 90.00
Refinement procedure
Resolution10.000 - 2.100
R-factor0.23409
Rwork0.234
R-free0.29491
Structure solution methodMOLECULAR REPLACEMENT
Starting model (for MR)1kf1
RMSD bond length0.019
RMSD bond angle2.804
Data reduction softwared*TREK
Data scaling softwared*TREK
Phasing softwarePHASER
Refinement softwareREFMAC (5.2.0019)
Data quality characteristics
 OverallOuter shell
Low resolution limit [Å]28.6902.180
High resolution limit [Å]2.1002.100
Rmerge0.0360.116
Number of reflections10055
<I/σ(I)>17.96.4
Completeness [%]91.095.9
Redundancy2.862.94
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, HANGING DROP6.5283333mM ammonium sulfate, 10mM magnesium chloride, 50mM sodium chloride, 50mM potassium chloride, 50mM potassium cacodylate pH 6.5, VAPOR DIFFUSION, HANGING DROP, temperature 283K
Crystallization Reagents
IDcrystal IDsolution IDreagent nameconcentrationdetails
111ammonium sulphate
1012potassium chloride
1112potassium cacodylate
1212HOH
211magnesium chloride
311sodium chloride
411potassium chloride
511potassium cacodylate
611HOH
712ammonium sulphate
812magnesium chloride
912sodium chloride

219869

PDB entries from 2024-05-15

PDB statisticsPDBj update infoContact PDBjnumon