3BD5
Crystal structure of single domain VL of an anti-DNA binding antibody 3D8 scFv and its active site revealed by complex structures of a small molecule and metals
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | PAL/PLS BEAMLINE 6C1 |
Synchrotron site | PAL/PLS |
Beamline | 6C1 |
Temperature [K] | 100 |
Detector technology | CCD |
Collection date | 2006-12-16 |
Detector | ADSC QUANTUM 210 |
Wavelength(s) | 1.2 |
Spacegroup name | P 31 2 1 |
Unit cell lengths | 62.132, 62.132, 93.239 |
Unit cell angles | 90.00, 90.00, 120.00 |
Refinement procedure
Resolution | 35.240 - 2.000 |
R-factor | 0.2235 |
Rwork | 0.224 |
R-free | 0.27610 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | PDB ID 2GKI |
RMSD bond length | 0.006 |
RMSD bond angle | 1.220 |
Data reduction software | HKL-2000 |
Data scaling software | HKL-2000 |
Phasing software | PHASER |
Refinement software | CNS (1.1) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 50.000 | 2.140 |
High resolution limit [Å] | 1.600 | 1.990 |
Number of reflections | 21274 | |
<I/σ(I)> | 2.5 | |
Completeness [%] | 75.6 | 97 |
Redundancy | 5.9 | 6.8 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 6.5 | 291 | 30% PEG 3350, 0.1M bis-tris, pH 6.5, VAPOR DIFFUSION, HANGING DROP, temperature 291.0K |