Loading
PDBj
MenuPDBj@FacebookPDBj@X(formerly Twitter)PDBj@BlueSkyPDBj@YouTubewwPDB FoundationwwPDBDonate
RCSB PDBPDBeBMRBAdv. SearchSearch help

2ZXJ

Crystal structure of YycF DNA-binding domain from Staphylococcus aureus

Replaces:  2Z9M
Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsSPRING-8 BEAMLINE BL44XU
Synchrotron siteSPring-8
BeamlineBL44XU
Temperature [K]100
Detector technologyCCD
Collection date2006-04-12
DetectorBruker DIP-6040
Wavelength(s)0.9
Spacegroup nameC 1 2 1
Unit cell lengths65.634, 45.556, 78.043
Unit cell angles90.00, 103.52, 90.00
Refinement procedure
Resolution28.520 - 1.870
R-factor0.18946
Rwork0.187
R-free0.23969
Structure solution methodMOLECULAR REPLACEMENT
Starting model (for MR)2d1v
RMSD bond length0.020
RMSD bond angle1.655
Data reduction softwareMOSFLM
Data scaling softwareSCALA
Phasing softwarePHASER
Refinement softwareREFMAC (5.5.0044)
Data quality characteristics
 OverallOuter shell
Low resolution limit [Å]28.5201.970
High resolution limit [Å]1.8701.870
Rmerge0.0490.395
Number of reflections18160
<I/σ(I)>20.2
Completeness [%]97.299.9
Redundancy3.43.5
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, SITTING DROP7.529325%(w/v) PEG3350, 0.2M Ammoniun acetate, 0.1M HEPES, pH 7.5, VAPOR DIFFUSION, SITTING DROP, temperature 293K

247947

PDB entries from 2026-01-21

PDB statisticsPDBj update infoContact PDBjnumon