2ZAH
X-ray structure of Melon necrotic spot virus
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | SPRING-8 BEAMLINE BL44XU |
Synchrotron site | SPring-8 |
Beamline | BL44XU |
Temperature [K] | 100 |
Detector technology | IMAGE PLATE |
Detector | MACSCIENCE |
Wavelength(s) | 0.900 |
Spacegroup name | I 2 3 |
Unit cell lengths | 375.004, 375.004, 375.004 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 187.500 - 2.810 |
R-factor | 0.20916 |
Rwork | 0.208 |
R-free | 0.22373 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 2tbv |
RMSD bond length | 0.010 |
RMSD bond angle | 1.352 |
Data reduction software | MOSFLM |
Data scaling software | SCALA |
Phasing software | DM |
Refinement software | REFMAC (5.3.0022) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 267.000 | 2.940 |
High resolution limit [Å] | 2.790 | 2.790 |
Rmerge | 0.164 | 0.608 |
Number of reflections | 208594 | |
<I/σ(I)> | 3.2 | |
Completeness [%] | 97.0 | |
Redundancy | 16.4 | 9.3 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 7 | 277 | PEG2000, phosphate buffer, pH 7.0, VAPOR DIFFUSION, HANGING DROP, temperature 277K |