2YZR
Crystal structure of pyridoxine biosynthesis protein from Methanocaldococcus jannaschii
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | APS BEAMLINE 22-BM |
Synchrotron site | APS |
Beamline | 22-BM |
Temperature [K] | 100 |
Detector technology | CCD |
Collection date | 2007-01-31 |
Detector | MARMOSAIC 225 mm CCD |
Wavelength(s) | 0.9790 |
Spacegroup name | I 2 2 2 |
Unit cell lengths | 106.054, 170.797, 173.334 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 38.300 - 2.300 |
R-factor | 0.197 |
Rwork | 0.197 |
R-free | 0.22500 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 1znn |
RMSD bond length | 0.005 |
RMSD bond angle | 1.200 |
Data reduction software | HKL-2000 |
Data scaling software | HKL-2000 |
Phasing software | MOLREP |
Refinement software | CNS (1.1) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 50.000 | 2.380 |
High resolution limit [Å] | 2.300 | 2.300 |
Rmerge | 0.081 | 0.235 |
Number of reflections | 68092 | |
<I/σ(I)> | 29.04 | 8.7 |
Completeness [%] | 98.1 | 99.7 |
Redundancy | 11.2 | 11.4 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 4.6 | 293 | 0.1M Sodium acetate pH 4.6, 3.5M Ammonium chloride, VAPOR DIFFUSION, SITTING DROP, temperature 293K |