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2YNU

Apo GIM-1 with 2Mol. Crystal structures of Pseudomonas aeruginosa GIM-1: active site plasticity in metallo-beta-lactamases

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsESRF BEAMLINE ID29
Synchrotron siteESRF
BeamlineID29
Temperature [K]100
Detector technologyCCD
DetectorADSC CCD
Spacegroup nameP 1 21 1
Unit cell lengths38.788, 135.385, 40.509
Unit cell angles90.00, 90.23, 90.00
Refinement procedure
Resolution19.712 - 2.060
R-factor0.1878
Rwork0.185
R-free0.23470
Structure solution methodMOLECULAR REPLACEMENT
RMSD bond length0.015
RMSD bond angle1.519
Data reduction softwareXDS
Data scaling softwareXSCALE
Refinement softwarePHENIX ((PHENIX.REFINE: 1.8_1069))
Data quality characteristics
 OverallOuter shell
Low resolution limit [Å]45.0002.170
High resolution limit [Å]2.0602.060
Rmerge0.0400.570
Number of reflections25067
<I/σ(I)>12.12
Completeness [%]97.298.7
Redundancy2.82.8
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
10.1M TRIS PH 7.1, 21% POLYETHYLENE GLYCOL MONOMETHYL ETHER 2000 (PEG MME 2K), 4% GLYCEROL

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PDB entries from 2026-01-14

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