Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help

2YJT

Crystal structure of E. coli DEAD-box protein SrmB bound to regulator of ribonuclease activity A (RraA)

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsDIAMOND BEAMLINE I04
Synchrotron siteDiamond
BeamlineI04
Temperature [K]100
Detector technologyCCD
Collection date2010-01-29
DetectorADSC CCD
Spacegroup nameP 32 2 1
Unit cell lengths73.390, 73.390, 222.891
Unit cell angles90.00, 90.00, 120.00
Refinement procedure
Resolution74.300 - 2.900
R-factor0.19544
Rwork0.192
R-free0.25658
Structure solution methodMOLECULAR REPLACEMENT
Starting model (for MR)1q5x
RMSD bond length0.015
RMSD bond angle1.590
Data reduction softwareMOSFLM
Data scaling softwareSCALA
Phasing softwarePHASER
Refinement softwareREFMAC (5.5.0109)
Data quality characteristics
 OverallOuter shell
Low resolution limit [Å]63.5603.060
High resolution limit [Å]2.9002.900
Rmerge0.1200.510
Number of reflections15208
<I/σ(I)>10.22.8
Completeness [%]99.699.5
Redundancy44.1
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, HANGING DROP7.2289CRYSTALS WERE PREPARED USING THE HANGING DROP METHOD AT 16 DEG. C BY MIXING 1:1 PROTEIN SAMPLE WITH MOTHER LIQUOR: 100 MM MAGNESIUM ACETATE, 100 MM MOPS PH 7.2 AND 12% W/V PEG 8000.THE CRYSTALS WERE TRANSFERRED BRIEFLY TO RESERVOIR SOLUTION SUPPLEMENTED WITH 25% (V/V) GLYCEROL AND FLASH FROZEN IN LIQUID NITROGEN.

227111

PDB entries from 2024-11-06

PDB statisticsPDBj update infoContact PDBjnumon