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2YI8

Structure of the RNA polymerase VP1 from Infectious Pancreatic Necrosis Virus

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsDIAMOND BEAMLINE I02
Synchrotron siteDiamond
BeamlineI02
Temperature [K]100
Detector technologyCCD
Collection date2009-06-29
DetectorADSC CCD
Spacegroup nameP 21 21 21
Unit cell lengths134.048, 183.874, 244.521
Unit cell angles90.00, 90.00, 90.00
Refinement procedure
Resolution90.330 - 2.300
R-factor0.1663
Rwork0.166
R-free0.18680
Structure solution methodMOLECULAR REPLACEMENT
Starting model (for MR)2pgg
RMSD bond length0.011
RMSD bond angle1.030
Data reduction softwareMOSFLM
Data scaling softwareSCALA
Phasing softwarePHASER
Refinement softwareBUSTER (2.9.2)
Data quality characteristics
 OverallOuter shell
Low resolution limit [Å]92.1302.360
High resolution limit [Å]2.3002.300
Rmerge0.2100.730
Number of reflections268352
<I/σ(I)>10.32.9
Completeness [%]100.0100
Redundancy7.27.2
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, SITTING DROPCRYSTALS WERE GROWN IN SITTING DROPS CONTAINING 200 NL PROTEIN (5.8-6.8 MG/ML) AND 100 NL RESERVOIR SOLUTION (20-18% W/V PEG 3350, 0.10-0.09 M BIS-TRIS PROPANE PH 7.5, 0.2-0.18 M SODIUM CITRATE) EQUILIBRATED AGAINST 95 UL RESERVOIRS AT 20.5 C. CRYSTALS WERE CRYOPROTECTED BY SOAKING IN MOTHER-LIQUOR SUPPLEMENTED WITH 20-25% GLYCEROL FOR 1-10 MIN.

220113

PDB entries from 2024-05-22

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