2YBD
Crystal structure of probable had family hydrolase from pseudomonas fluorescens pf-5 with bound phosphate
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | ROTATING ANODE |
Source details | RIGAKU RU200 |
Temperature [K] | 93 |
Detector technology | IMAGE PLATE |
Detector | RIGAKU-MSC RAXIS IV |
Spacegroup name | P 61 2 2 |
Unit cell lengths | 65.978, 65.978, 250.400 |
Unit cell angles | 90.00, 90.00, 120.00 |
Refinement procedure
Resolution | 32.989 - 2.001 |
R-factor | 0.173 |
Rwork | 0.171 |
R-free | 0.21770 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 3m9l |
RMSD bond length | 0.008 |
RMSD bond angle | 1.032 |
Data reduction software | MOSFLM |
Data scaling software | SCALA |
Phasing software | PHENIX |
Refinement software | PHENIX ((PHENIX.REFINE)) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 40.000 | 2.030 |
High resolution limit [Å] | 2.000 | 2.000 |
Rmerge | 0.080 | 0.300 |
Number of reflections | 22605 | |
<I/σ(I)> | 32.6 | 6.4 |
Completeness [%] | 98.5 | 89.2 |
Redundancy | 15.3 | 6.4 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | 5 | PROTEIN (10MM HEPES PH 7.5, 150 MM NACL, 10% GLYCEROL, 5 MM DTT, 5 MM MGCL);RESERVOUR (2.5 M NA/K PHOSPHATE, 150 MM NACITRATE, PH 5.0;CRYOPROTECTION (1.8 M NA/K PHOSPHATE, 100 MM NACITRATE, 18.5% GLYCEROL, 185 MM MGSO4) TWO MINUTE SOAK. |