Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help

2YBD

Crystal structure of probable had family hydrolase from pseudomonas fluorescens pf-5 with bound phosphate

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeROTATING ANODE
Source detailsRIGAKU RU200
Temperature [K]93
Detector technologyIMAGE PLATE
DetectorRIGAKU-MSC RAXIS IV
Spacegroup nameP 61 2 2
Unit cell lengths65.978, 65.978, 250.400
Unit cell angles90.00, 90.00, 120.00
Refinement procedure
Resolution32.989 - 2.001
R-factor0.173
Rwork0.171
R-free0.21770
Structure solution methodMOLECULAR REPLACEMENT
Starting model (for MR)3m9l
RMSD bond length0.008
RMSD bond angle1.032
Data reduction softwareMOSFLM
Data scaling softwareSCALA
Phasing softwarePHENIX
Refinement softwarePHENIX ((PHENIX.REFINE))
Data quality characteristics
 OverallOuter shell
Low resolution limit [Å]40.0002.030
High resolution limit [Å]2.0002.000
Rmerge0.0800.300
Number of reflections22605
<I/σ(I)>32.66.4
Completeness [%]98.589.2
Redundancy15.36.4
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
15PROTEIN (10MM HEPES PH 7.5, 150 MM NACL, 10% GLYCEROL, 5 MM DTT, 5 MM MGCL);RESERVOUR (2.5 M NA/K PHOSPHATE, 150 MM NACITRATE, PH 5.0;CRYOPROTECTION (1.8 M NA/K PHOSPHATE, 100 MM NACITRATE, 18.5% GLYCEROL, 185 MM MGSO4) TWO MINUTE SOAK.

222926

PDB entries from 2024-07-24

PDB statisticsPDBj update infoContact PDBjnumon