2X0S
3.0 A RESOLUTION CRYSTAL STRUCTURE OF GLYCOSOMAL PYRUVATE PHOSPHATE DIKINASE FROM TRYPANOSOMA BRUCEI
Replaces: 1H6ZExperimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | LURE BEAMLINE DW32 |
Synchrotron site | LURE |
Beamline | DW32 |
Temperature [K] | 277 |
Detector technology | IMAGE PLATE |
Collection date | 2000-06-15 |
Detector | MARRESEARCH |
Spacegroup name | P 21 21 2 |
Unit cell lengths | 121.170, 153.500, 65.460 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 23.938 - 2.997 |
R-factor | 0.1687 |
Rwork | 0.165 |
R-free | 0.24150 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 1dik |
RMSD bond length | 0.009 |
RMSD bond angle | 1.345 |
Data reduction software | XDS |
Data scaling software | BIOMOL (SCALKB2 KBAPLY CCP4 TRUNCATE) |
Phasing software | CNS |
Refinement software | PHENIX ((PHENIX.REFINE)) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 24.000 | 3.100 |
High resolution limit [Å] | 3.000 | 3.000 |
Rmerge | 0.090 | 0.280 |
Number of reflections | 24120 | |
<I/σ(I)> | 14.8 | 3.1 |
Completeness [%] | 96.0 | 88.6 |
Redundancy | 5.3 | 3.4 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 8.8 | HANGING DROP, 2 MICROLITER PROTEIN AND 2 MICROLITER PRECIPITANT SOLUTION. PROTEIN SOLUTION. 50 MG/ML, 20 MM IMIDAZOLE PH 7.0, 100 MM NACL, 100 MM MGCL2, 20% (V/V) GLYCEROL. PRECIPITANT SOLUTION. 0.1 M BICINE PH 8.8, 1.5 % (W/V) PEG 5000 MONOMETHYLETHER, 10 % (V/V) GLYCEROL |