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2VIV

Fragment-Based Discovery of Mexiletine Derivatives as Orally Bioavailable Inhibitors of Urokinase-Type Plasminogen Activator

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeROTATING ANODE
Source detailsRIGAKU RUH3R
Temperature [K]93
Detector technologyCCD
DetectorRIGAKU CCD
Spacegroup nameP 21 21 21
Unit cell lengths52.338, 54.001, 81.938
Unit cell angles90.00, 90.00, 90.00
Refinement procedure
Resolution34.160 - 1.720
R-factor0.183
Rwork0.180
R-free0.23770
Structure solution methodOTHER
Starting model (for MR)NONE
Data reduction softwared*TREK
Data scaling softwared*TREK
Refinement softwareBUSTER-TNT (2.1.1)
Data quality characteristics
 OverallOuter shell
Low resolution limit [Å]34.1601.730
High resolution limit [Å]1.7201.720
Rmerge0.0600.290
Number of reflections21002
<I/σ(I)>2
Completeness [%]82.822.6
Redundancy2.4
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
16.6PROTEIN WAS CRYSTALLIZED FROM 22-24% PEG4000, 0.17M (NH4)2SO4, 15% GLYCEROL, 0.1M NA(CH3COO) PH=4.0; THEN SOAKED IN 0.04M COMPOUND, 28% PEG4000, 5% GLYCEROL, 0.29M BISTRIS PH=6.6, 0.001M NA(CH3COO), 0.001M (NH4)2SO4

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PDB entries from 2024-08-21

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