Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help

2VGB

HUMAN ERYTHROCYTE PYRUVATE KINASE

Replaces:  1LIU
Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsESRF
Synchrotron siteESRF
BeamlineID14-2
Temperature [K]100
Detector technologyIMAGE PLATE
Spacegroup nameP 1 21 1
Unit cell lengths74.413, 172.058, 85.512
Unit cell angles90.00, 92.46, 90.00
Refinement procedure
Resolution20.000 - 2.730
R-factor0.229
Rwork0.227
R-free0.27100
Structure solution methodMOLECULAR REPLACEMENT
Starting model (for MR)1pkn
RMSD bond length0.014
RMSD bond angle1.513
Data reduction softwareMOSFLM
Data scaling softwareCCP4
Phasing softwareAMoRE
Refinement softwareREFMAC (5.2.0019)
Data quality characteristics
 OverallOuter shell
Low resolution limit [Å]20.0002.700
High resolution limit [Å]2.7002.700
Rmerge0.0800.240
Number of reflections55091
<I/σ(I)>13.42.4
Completeness [%]95.986.5
Redundancy2.12.1
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, HANGING DROP6.5295RECOMBINANT WILD-TYPE RPK WAS CRYSTALLIZED USING THE VAPOR DIFFUSION METHOD AT 22 C. WELL SOLUTIONS CONSISTED OF 50 MM MES/KOH, PH 6.4, 10 MM MNSO4, AND 10-14% W/V PEG8000. HANGING DROPS WERE FORMED BY MIXING EQUAL VOLUMES OF 12 MG/ML PROTEIN IN 50 MM KCL, 5 MM FBP, 5 MM PHOSPHOGLYCOLATE, 20 MM POTASSIUM PHOSPHATE, PH 7.0, AND WELL SOLUTIONS.

223532

PDB entries from 2024-08-07

PDB statisticsPDBj update infoContact PDBjnumon