2SIV
SIV GP41 CORE STRUCTURE
Experimental procedure
Source type | ROTATING ANODE |
Source details | RIGAKU RUH3R |
Temperature [K] | 100 |
Detector technology | IMAGE PLATE |
Collection date | 1998-05 |
Detector | RIGAKU RAXIS IV |
Spacegroup name | P 21 21 21 |
Unit cell lengths | 55.722, 57.713, 66.513 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 20.000 - 2.200 |
R-factor | 0.211 |
Rwork | 0.211 |
R-free | 0.28800 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 1aik |
RMSD bond length | 0.009 |
RMSD bond angle | 20.800 * |
Data reduction software | DENZO |
Data scaling software | SCALEPACK |
Phasing software | X-PLOR (3.851) |
Refinement software | X-PLOR (3.851) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 25.000 | 2.280 |
High resolution limit [Å] | 2.200 | 2.200 |
Rmerge | 0.058 | 0.244 |
Total number of observations | 52353 * | |
Number of reflections | 11157 | |
<I/σ(I)> | 23.3 | 5.5 |
Completeness [%] | 96.9 | 88.3 |
Redundancy | 4.9 | 4.5 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | Vapor diffusion, hanging drop * | 6.5 | PROTEIN WAS CRYSTALLIZED FROM 18-19% PEG8000, 0.1 M SODIUM CACODILATE PH 6.5, 0.2 M MG-ACETATE |
Crystallization Reagents in Literatures
ID | crystal ID | solution | reagent name | concentration (unit) | details |
1 | 1 | drop | protein | 10 (mg/ml) | |
2 | 1 | reservoir | PEG8000 | 18-19 (%) | |
3 | 1 | reservoir | sodium cacodylate | 0.1 (M) | |
4 | 1 | reservoir | magnesium acetate | 0.2 (M) |