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2RDV

RUBREDOXIN FROM DESULFOVIBRIO VULGARIS MIYAZAKI F, MONOCLINIC CRYSTAL FORM

Experimental procedure
Source typeSYNCHROTRON
Source detailsPHOTON FACTORY BEAMLINE BL-6A
Synchrotron sitePhoton Factory
BeamlineBL-6A
Temperature [K]288
Detector technologyIMAGE PLATE
DetectorFUJI
Spacegroup nameP 1 21 1
Unit cell lengths27.300, 44.900, 51.200
Unit cell angles90.00, 90.60, 90.00
Refinement procedure
Resolution20.000 - 1.900
R-factor0.175
Rwork0.175
R-free0.21600
Structure solution methodMOLECULAR REPLACEMENT
Starting model (for MR)1rdv
RMSD bond length0.012
RMSD bond angle1.633

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Data reduction softwareWEIS
Data scaling softwareFSCALE
Phasing softwareX-PLOR
Refinement softwareX-PLOR
Data quality characteristics
 Overall
Low resolution limit [Å]20.000
High resolution limit [Å]1.900
Rmerge0.111
Total number of observations53316

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Number of reflections9604

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Completeness [%]82.5
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1Microdialysis

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7

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10

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Higuchi, Y., (1998) Protein Pept.Lett., 5, 175.

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Crystallization Reagents in Literatures
IDcrystal IDsolutionreagent nameconcentration (unit)details
111protein10 (mg/ml)
211Tris-HCl50 (mM)
311ammonium sulfate60-70 (%sat)
412ammonium sulfate75-80 (%sat)

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PDB entries from 2024-05-01

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