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2QP9

Crystal Structure of S.cerevisiae Vps4

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsAPS BEAMLINE 23-ID-D
Synchrotron siteAPS
Beamline23-ID-D
Detector technologyCCD
Spacegroup nameP 65 2 2
Unit cell lengths86.553, 86.553, 236.061
Unit cell angles90.00, 90.00, 120.00
Refinement procedure
Resolution10.000 - 2.900
R-factor0.25996
Rwork0.258
R-free0.28819
Structure solution methodMAD
RMSD bond length0.009
RMSD bond angle1.137
Data reduction softwareDENZO
Data scaling softwareSCALEPACK
Phasing softwareSHARP
Refinement softwareREFMAC
Data quality characteristics
 OverallOuter shell
Low resolution limit [Å]50.0003.000
High resolution limit [Å]2.9002.900
Rmerge0.0630.606
Number of reflections12599
<I/σ(I)>37.53.8
Completeness [%]98.199.2
Redundancy13.2
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION6.5293Sodium Acetate, CdSO4, pH 6.5, temperature 293K, VAPOR DIFFUSION
1VAPOR DIFFUSION6.5293Sodium Acetate, CdSO4, pH 6.5, temperature 293K, VAPOR DIFFUSION
1VAPOR DIFFUSION6.5293Sodium Acetate, CdSO4, pH 6.5, temperature 293K, VAPOR DIFFUSION

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PDB entries from 2024-10-09

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