2Q0F
Terminal uridylyl transferase 4 from Trypanosoma brucei with bound UTP and UMP
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | SSRL BEAMLINE BL1-5 |
Synchrotron site | SSRL |
Beamline | BL1-5 |
Collection date | 2006-07-19 |
Wavelength(s) | 0.979 |
Spacegroup name | P 1 21 1 |
Unit cell lengths | 80.620, 41.924, 106.017 |
Unit cell angles | 90.00, 94.37, 90.00 |
Refinement procedure
Resolution | 38.980 - 2.400 |
R-factor | 0.226 |
Rwork | 0.223 |
R-free | 0.29300 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 2ikf |
RMSD bond length | 0.012 |
RMSD bond angle | 1.553 |
Data reduction software | d*TREK |
Data scaling software | d*TREK (9.2L) |
Phasing software | PHASER |
Refinement software | REFMAC (5.2.0005) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 41.920 | 41.920 | 2.490 |
High resolution limit [Å] | 2.400 | 5.170 | 2.400 |
Rmerge | 0.140 | 0.045 | 0.476 |
Total number of observations | 10431 | 9127 | |
Number of reflections | 26495 | ||
<I/σ(I)> | 6.4 | 20.2 | 2.3 |
Completeness [%] | 93.8 | 97.8 | 93 |
Redundancy | 3.38 | 3.57 | 3.48 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 6.5 | 277 | 100 mM sodium cacodylate, 200 mM calcium acetate, 18% PEG-8000, 4 mM MgCl2, 50 uM UTP, crystals soaked in 10 mM UMP for 30 minutes, pH 6.5, VAPOR DIFFUSION, HANGING DROP, temperature 277K |