2PHK
THE CRYSTAL STRUCTURE OF A PHOSPHORYLASE KINASE PEPTIDE SUBSTRATE COMPLEX: KINASE SUBSTRATE RECOGNITION
Experimental procedure
Source type | SYNCHROTRON |
Source details | ESRF BEAMLINE BM02 |
Synchrotron site | ESRF |
Beamline | BM02 |
Temperature [K] | 100 |
Detector technology | CCD AREA DETECTOR |
Collection date | 1997-03-11 |
Detector | XRII |
Spacegroup name | P 32 2 1 |
Unit cell lengths | 65.300, 65.300, 145.800 |
Unit cell angles | 90.00, 90.00, 120.00 |
Refinement procedure
Resolution | 25.000 - 2.600 |
R-factor | 0.253 |
Rwork | 0.236 |
R-free | 0.30000 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 1phk |
RMSD bond length | 0.015 * |
RMSD bond angle | 1.800 * |
Data reduction software | MOSFLM |
Data scaling software | CCP4 |
Phasing software | AMoRE |
Refinement software | REFMAC |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 20.000 | 2.740 |
High resolution limit [Å] | 2.600 | 2.600 |
Rmerge | 0.098 | 0.360 |
Total number of observations | 21644 * | |
Number of reflections | 10062 | |
<I/σ(I)> | 7.1 | 1.3 |
Completeness [%] | 86.3 | 78.1 |
Redundancy | 2.15 | 3.7 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | Vapor diffusion, hanging drop * | 8.2 * | pH 6.9 |
Crystallization Reagents in Literatures
ID | crystal ID | solution | reagent name | concentration (unit) | details |
1 | 1 | drop | protein | 2-3 (mg/ml) | |
10 | 1 | reservoir | PEG8000 | 5 (%) | |
11 | 1 | reservoir | HEPES | 50 (mM) | |
12 | 1 | reservoir | glycerol | 10 (%(v/v)) | |
13 | 1 | reservoir | dithiothreitol | 10 (mM) | |
14 | 1 | reservoir | 0.02 (%(w/v)) | ||
15 | 1 | reservoir | 5 (mM) | ||
2 | 1 | drop | MC-peptide | 10 (mM) | |
3 | 1 | drop | AMPPNP | 3 (mM) | |
4 | 1 | drop | HEPES/NaOH | 10 (mM) | |
5 | 1 | drop | glycerol | 2 (%(v/v)) | |
6 | 1 | drop | dithiothreitol | 10 (mM) | |
7 | 1 | drop | 0.2 (%(w/v)) | ||
8 | 1 | drop | EDTA | 0.1 (mM) | |
9 | 1 | drop | 5 (mM) |