2OSH
crystal structure of Natratoxin, a snake sPLA2 that blocks A-type K+ channel
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | ROTATING ANODE |
Source details | RIGAKU |
Temperature [K] | 100 |
Detector technology | IMAGE PLATE |
Collection date | 2006-06-11 |
Detector | MAR scanner 345 mm plate |
Wavelength(s) | 1.5418 |
Spacegroup name | P 41 |
Unit cell lengths | 42.078, 42.078, 64.117 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 20.000 - 2.200 |
R-factor | 0.192 |
Rwork | 0.190 |
R-free | 0.24200 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 1mf4 |
RMSD bond length | 0.012 |
RMSD bond angle | 1.244 |
Data reduction software | MOSFLM |
Data scaling software | SCALA |
Phasing software | MOLREP |
Refinement software | REFMAC (5.2.0019) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 20.000 | 25.510 | 2.320 |
High resolution limit [Å] | 2.200 | 6.960 | 2.200 |
Rmerge | 0.052 | 0.025 | 0.127 |
Total number of observations | 348 | 1580 | |
Number of reflections | 5557 | ||
<I/σ(I)> | 2.8 | 24 | 3.5 |
Completeness [%] | 97.4 | 85 | 98.7 |
Redundancy | 2 | 2.2 | 2 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 7 | 281 | 2.0M Ammonium Sulfate, 5% v/v iso-Propano, pH 7.0, VAPOR DIFFUSION, HANGING DROP, temperature 281K |