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2ONT

A swapped dimer of the HIV-1 capsid C-terminal domain

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsAPS BEAMLINE 19-ID
Synchrotron siteAPS
Beamline19-ID
Temperature [K]100
Detector technologyCCD
Collection date2006-03-15
DetectorADSC QUANTUM 315
Wavelength(s)1.1
Spacegroup nameP 43 21 2
Unit cell lengths40.129, 40.129, 105.322
Unit cell angles90.00, 90.00, 90.00
Refinement procedure
Resolution30.000 - 2.400
R-factor0.246
Rwork0.243
R-free0.29400
Structure solution methodMOLECULAR REPLACEMENT
Starting model (for MR)the structure of the wild-type CA-CTD monomer (1A8O). In the above search model the linker region and a part of helix 2 (residues 174-188 of the capsid) were removed to avoid introducing a bias in the possible mode of dimerization
RMSD bond length0.018
RMSD bond angle1.755
Data reduction softwareHKL-2000
Data scaling softwareHKL-2000
Phasing softwarePHASER
Refinement softwareREFMAC (5.2.0005)
Data quality characteristics
 OverallOuter shell
Low resolution limit [Å]50.0002.380
High resolution limit [Å]2.3002.300
Rmerge0.0460.313
Number of reflections4176
<I/σ(I)>5
Completeness [%]98.089.6
Redundancy6.95.3
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, HANGING DROP6.75277Reservoir: 0.1 M Sodium phosphate pH 6.75, 28% v/v PEG 1500, 15% v/v glycerol, VAPOR DIFFUSION, HANGING DROP, temperature 277K

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