Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help

2OMK

Structure of the Bacteroides Thetaiotaomicron Thiamin Pyrophosphokinase

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsAPS BEAMLINE 5ID-B
Synchrotron siteAPS
Beamline5ID-B
Temperature [K]100
Detector technologyCCD
Collection date2006-04-17
DetectorMARRESEARCH
Wavelength(s)1.0000
Spacegroup nameP 1 21 1
Unit cell lengths56.309, 66.084, 57.552
Unit cell angles90.00, 99.90, 90.00
Refinement procedure
Resolution30.000 - 1.800
R-factor0.1664
Rwork0.165
R-free0.20025
Structure solution methodSAD
RMSD bond length0.008
RMSD bond angle1.094
Data reduction softwareHKL-2000
Data scaling softwareHKL-2000
Phasing softwarePHENIX
Refinement softwareREFMAC (5.2.0019)
Data quality characteristics
 OverallOuter shell
Low resolution limit [Å]45.0001.860
High resolution limit [Å]1.8001.800
Rmerge0.0710.300
Number of reflections36873
<I/σ(I)>23.75.5
Completeness [%]94.867.1
Redundancy6.94.5
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, SITTING DROP4.72950.05 M Potassium phosphate monobasic, 20 % w/v Polyethylene glycol 8000, pH 4.7, VAPOR DIFFUSION, SITTING DROP, temperature 295K
1VAPOR DIFFUSION, SITTING DROP4.72950.05 M Potassium phosphate monobasic, 20 % w/v Polyethylene glycol 8000, pH 4.7, VAPOR DIFFUSION, SITTING DROP, temperature 295K
1VAPOR DIFFUSION, SITTING DROP4.72950.05 M Potassium phosphate monobasic, 20 % w/v Polyethylene glycol 8000, pH 4.7, VAPOR DIFFUSION, SITTING DROP, temperature 295K

219869

PDB entries from 2024-05-15

PDB statisticsPDBj update infoContact PDBjnumon