2OBC
The crystal structure of RibD from Escherichia coli in complex with a substrate analogue, ribose 5-phosphate (beta form), bound to the active site of the reductase domain
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | ESRF BEAMLINE ID14-1 |
Synchrotron site | ESRF |
Beamline | ID14-1 |
Temperature [K] | 100 |
Detector technology | CCD |
Collection date | 2004-03-17 |
Detector | ADSC QUANTUM 4 |
Wavelength(s) | 0.934 |
Spacegroup name | P 31 2 1 |
Unit cell lengths | 173.100, 173.100, 76.700 |
Unit cell angles | 90.00, 90.00, 120.00 |
Refinement procedure
Resolution | 28.860 - 3.000 |
R-factor | 0.22502 |
Rwork | 0.222 |
R-free | 0.27557 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 2g6v |
RMSD bond length | 0.009 |
RMSD bond angle | 1.345 |
Data reduction software | XDS |
Data scaling software | XSCALE |
Phasing software | MOLREP |
Refinement software | REFMAC (5.2.0019) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 30.000 | 3.100 |
High resolution limit [Å] | 3.000 | 3.000 |
Rmerge | 0.081 | 0.409 |
Number of reflections | 26665 | |
<I/σ(I)> | 17.2 | 3.8 |
Completeness [%] | 99.8 | 99.1 |
Redundancy | 4.9 | 4.8 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 6.5 | 293 | 0.1M MES pH 6.5, 3% (v/v) 1,6 Hexandiol, VAPOR DIFFUSION, HANGING DROP, temperature 293K |