Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help

2JD7

Crystal Structure of the Fe-soaked Ferritin from the Hyperthermophilic Archaeal Anaerobe Pyrococcus furiosus

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsESRF BEAMLINE BM14
Synchrotron siteESRF
BeamlineBM14
Temperature [K]100
Detector technologyCCD
Collection date2006-06-25
DetectorMARRSEARCH
Spacegroup nameC 2 2 21
Unit cell lengths254.301, 342.878, 266.221
Unit cell angles90.00, 90.00, 90.00
Refinement procedure
Resolution204.120 - 2.800
R-factor0.201
Rwork0.199
R-free0.25000
Structure solution methodMOLECULAR REPLACEMENT
Starting model (for MR)REFINED 2JD6 COORDINATES
RMSD bond length0.014
RMSD bond angle1.467
Data reduction softwareMOSFLM
Data scaling softwareSCALA
Refinement softwareREFMAC (5.3.0021)
Data quality characteristics
 OverallOuter shell
Low resolution limit [Å]42.0002.950
High resolution limit [Å]2.8002.800
Rmerge0.0800.350
Number of reflections280407
<I/σ(I)>8.22
Completeness [%]99.194.1
Redundancy3.62.6
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1THE CRYSTALS USED FOR DATA COLLECTION WERE GROWN AGAINST 0.5 ML OF 2 M AMMONIUM SULPHATE RESERVOIR SOLUTION, WITH DROPS CONTAINING 2 MICRO-L OF 5 MG/ML PROTEIN SOLUTION IN 50 MM HEPES, PH 7 AND EQUAL AMOUNT OF THE RESERVOIR SOLUTION. IRON SOAKING OF FERRITIN CRYSTALS WAS PERFORMED BY TRANSFERRING THEM TO A 10-20 MICRO-L DROP OF A SOLUTION WITH COMPOSITION 20 MM FESO4, 2 MM NA2S2O4, 25 % GLYCEROL AND 2 M AMMONIUM SULFATE, FOR 15 MINUTES.

226707

PDB entries from 2024-10-30

PDB statisticsPDBj update infoContact PDBjnumon