2HZR
Crystal structure of human apolipoprotein D (ApoD)
Experimental procedure
Experimental method | MAD |
Source type | SYNCHROTRON |
Source details | ESRF BEAMLINE ID14-4 |
Synchrotron site | ESRF |
Beamline | ID14-4 |
Temperature [K] | 100 |
Detector technology | CCD |
Collection date | 2005-07-11 |
Detector | ADSC QUANTUM 4 |
Wavelength(s) | 0.97940,0.97969,0.96863 |
Spacegroup name | P 43 21 2 |
Unit cell lengths | 49.247, 49.247, 143.486 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 30.000 - 1.800 |
R-factor | 0.205 |
Rwork | 0.202 |
R-free | 0.25000 |
Structure solution method | MAD |
RMSD bond length | 0.014 |
RMSD bond angle | 1.431 |
Data reduction software | MOSFLM |
Data scaling software | SCALA |
Phasing software | SHARP |
Refinement software | REFMAC |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 46.580 | 49.270 | 1.900 |
High resolution limit [Å] | 1.800 | 5.690 | 1.800 |
Rmerge | 0.067 | 0.051 | 0.285 |
Total number of observations | 7194 | 35742 | |
Number of reflections | 17002 | ||
<I/σ(I)> | 6.4 | 12 | 2.2 |
Completeness [%] | 99.1 | 95.2 | 98.7 |
Redundancy | 15 | 12 | 14.7 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 7.5 | 293 | 1.1 M lithium sulfate, 0.1 M ammonium formate, 0.075 M Hepes/NaOH, pH 7.5, VAPOR DIFFUSION, HANGING DROP, temperature 293K |
1 | VAPOR DIFFUSION, HANGING DROP | 7.5 | 293 | 1.1 M lithium sulfate, 0.1 M ammonium formate, 0.075 M Hepes/NaOH, pH 7.5, VAPOR DIFFUSION, HANGING DROP, temperature 293K |
1 | VAPOR DIFFUSION, HANGING DROP | 7.5 | 293 | 1.1 M lithium sulfate, 0.1 M ammonium formate, 0.075 M Hepes/NaOH, pH 7.5, VAPOR DIFFUSION, HANGING DROP, temperature 293K |